PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG182300.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 807aa    MW: 88681 Da    PI: 5.7956
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG182300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.6e-192885457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Pavir.9KG182300.3.p 28 YVRYTPEQVEALERVYAECPKPSSARRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 85
                         6789***************************************************996 PP

2START118.87.7e-3817933949204
                          EEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS CS
                START  49 rasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqk 135
                          +a+  v m+ ++ ve+l d++ +W ++++  e+   +  g  g+++l +++++a+++lvp Rdf+++Ry+ +l++g++v++++S++    
  Pavir.9KG182300.3.p 179 TAIDWVQMPGMKIVEILKDRP-CWFRDCRGLEVFTMLPAGngGTIELVSMQMYAPTTLVPaRDFWTLRYTTTLEDGSLVVCERSLSGSGG 267
                          567789999999999999999.*******9999999999999********************************************9877 PP

                          --....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 136 ppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                           ++    +++vRae+lpSg+l++++++g+s v +v+h dl++++++++lr+l++s+++ ++k+++a+l++ +
  Pavir.9KG182300.3.p 268 GQStatAQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAWSVPEVLRPLYESSRVVAQKMTTAALRYIR 339
                          77667799************************************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-19785IPR009057Homeodomain-like
PROSITE profilePS5007115.582286IPR001356Homeobox domain
SMARTSM003898.9E-172490IPR001356Homeobox domain
CDDcd000864.31E-172787No hitNo description
SuperFamilySSF466891.28E-162788IPR009057Homeodomain-like
PfamPF000462.3E-162885IPR001356Homeobox domain
CDDcd146864.44E-679118No hitNo description
SMARTSM002349.3E-20136341IPR002913START domain
SuperFamilySSF559617.55E-25159344No hitNo description
PROSITE profilePS5084821.001161350IPR002913START domain
PfamPF018523.6E-35180339IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-13190323IPR023393START-like domain
PfamPF086701.3E-47663805IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MAAAVAMRSG SSDGGGGYDK GGMDTGKYVR YTPEQVEALE RVYAECPKPS SARRQQLLRE  60
CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAYMKQQ LQNPSLTNDT SCESHVTTPA NLRDASNPSG LLSIAEETLT EFLSKATGTA  180
IDWVQMPGMK IVEILKDRPC WFRDCRGLEV FTMLPAGNGG TIELVSMQMY APTTLVPARD  240
FWTLRYTTTL EDGSLVVCER SLSGSGGGQS TATAQQFVRA EMLPSGYLVR QCEGGGSIVR  300
IVDHLDLDAW SVPEVLRPLY ESSRVVAQKM TTAALRYIRQ IAQETSGEVV YPLGRQPAVL  360
RTFSQRLSRG FNDAISGFND DGWSVMGGDG IEDVIIACNS KKIKNSSNPA SAFGAPGGII  420
CAKASMLLQG VPPAVLVRFL REHRSEWADY NFDAYSASAL KTSPCSLPGL RPMRFSGSQI  480
VMPLAHTVEN EEILEVVRLE GQALTHDEGV LSREIHLLQL CTGFDEKSMG SCFQLVFAPI  540
DELFPDDAPL ISSGFRVIPL DIKTDGVPSG RTLDLASSLE VGTTAQHASG DGSQDDCNLR  600
SVLTIAFQFP YEIHLQDSVA AVARQYVRSI VSAVQRVSMA ISPSRSGLST GQKIISGFPE  660
AATLVRWICQ SYQYHLGVDL VSHSDEAGES LLRMFWDHQD AVLCCSFKEK PVFTFGNQMG  720
IDMLETTLIA LQDLTLDKIF DEAGRKALHA EIPKLMEQGY AYLPPGVGLS GMGRHVSYEQ  780
AVAWKVLGDD SNVHCLAFCF VNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.21270.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467067.10.0hypothetical protein SORBIDRAFT_01g019120
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLC5WYD40.0C5WYD4_SORBI; Putative uncharacterized protein Sb01g019120
STRINGSb01g019120.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein